Validating Two Pathological Foundation Models for Breast Biomarker Detection
Published in In preparation, 2025
First study transferring Direct Preference Optimization (DPO) from LLM alignment to computational pathology. A label-free preference-pair pipeline (UMAP + DBSCAN on TITAN embeddings) plus LoRA-DPO fine-tuning lifts PR-status AUROC from 79.75% to 81.92% and Cohen’s κ from 45.40% to 54.43%. In preparation.
Recommended citation: Atiya, S., Liang, J., et al. (2025). "Validating Two Pathological Foundation Models for Breast Biomarker Detection." In preparation.
